# Vendored Packages

This directory contains source-vendored copies of the Cordis framework and its foundation libraries. They are copied into this monorepo instead of being depended on via npm, so that the harness fully owns its framework layer (auditable, patchable, pinned).

All vendored packages are **renamed into the `@deepseek-ai` scope** (`cordis` → `@deepseek-ai/cordis`, `@cordisjs/plugin-<x>` → `@deepseek-ai/cordis-plugin-<x>`): every harness package declares `cordis` as a peer dependency, so publishing the harness publishes this framework layer too, and a publication under the upstream names would squat them on the registry. Directory names and upstream version numbers are deliberately unchanged, so the manifest below still reads as an upstream snapshot. `pnpm-workspace.yaml#linkWorkspacePackages` makes those preserved semver ranges resolve these pinned workspaces, including imports from built `lib/`. The `hygiene` gate `verify-vendored-links` asserts every vendored name resolves to a workspace `link:` in `pnpm-lock.yaml` with no registry copy alongside. Schemastery's manifest additionally declares a conditional `exports` map (import → `.mjs`, require → `.cjs`): pnpm links the directory itself, so without `exports` Node's ESM resolver would fall back to `main` and load the CJS entry whose lazy `require('@deepseek-ai/cosmokit')` can race ESM loading of the same linked module under module-hook hosts (vitest). Upstream MIT `LICENSE` files are preserved in each package directory.

This file covers the manifest, the local-modification log, and the procedure for **updating** an existing vendored package. To **add a new** one, see the cookbook guide: [docs/cookbook/adding-a-vendored-package.md](../docs/cookbook/adding-a-vendored-package.md).

## Manifest

Upstream workspace: `cordis-workspace` (local checkout: `~/repos/cordis-workspace`).

| Directory | npm name | Upstream name | Version | Upstream repo | Commit |
|---|---|---|---|---|---|
| `cosmokit/` | `@deepseek-ai/cosmokit` | `cosmokit` | 1.8.1 | https://github.com/deepseek-harness/cosmokit | `16f6fc058ade66e8ac5da0033d35a8d0f279f544` |
| `schemastery/` | `@deepseek-ai/schemastery` | `schemastery` | 3.18.0 | https://github.com/deepseek-harness/schemastery (`packages/core`) | `e67cee00ad725bd1534aee930a979ea3eec6f698` |
| `cordis/` | `@deepseek-ai/cordis` | `cordis` | 4.0.0-rc.7 | https://github.com/cordiverse/cordis (`packages/core`) | `56b3d4f725681cf4556c1a8695a709cc3b6eed74` |
| `loader/` | `@deepseek-ai/cordis-plugin-loader` | `@cordisjs/plugin-loader` | 1.0.0-rc.5 | https://github.com/cordiverse/cordis (`packages/loader`) | `56b3d4f725681cf4556c1a8695a709cc3b6eed74` |
| `include/` | `@deepseek-ai/cordis-plugin-include` | `@cordisjs/plugin-include` | 1.0.4 | https://github.com/deepseek-harness/cordis (`packages/include`) | `abb0a307cb1d3b0947f455d590cf5ba922d4caa4` |
| `group/` | `@deepseek-ai/cordis-plugin-group` | `@cordisjs/plugin-group` | 1.0.0 | https://github.com/deepseek-harness/cordis (`packages/group`) | `abb0a307cb1d3b0947f455d590cf5ba922d4caa4` |
| `timer/` | `@deepseek-ai/cordis-plugin-timer` | `@cordisjs/plugin-timer` | 1.1.2 | https://github.com/deepseek-harness/cordis (`packages/timer`) | `abb0a307cb1d3b0947f455d590cf5ba922d4caa4` |
| `hmr/` | `@deepseek-ai/cordis-plugin-hmr` | `@cordisjs/plugin-hmr` | 1.0.15 | https://github.com/deepseek-harness/cordis (`packages/hmr`) | `abb0a307cb1d3b0947f455d590cf5ba922d4caa4` |
| `logger-console/` | `@deepseek-ai/cordis-plugin-logger-console` | `@cordisjs/plugin-logger-console` | 1.0.0 | https://github.com/deepseek-harness/cordis (`packages/logger-console`) | `abb0a307cb1d3b0947f455d590cf5ba922d4caa4` |

Third-party dependencies of the vendored packages stay on npm: `@standard-schema/spec`, `js-yaml`, `chokidar`, `picomatch`, `@babel/code-frame`, `supports-color`, `node-addon-require-builtin`.

Intentionally **not** vendored (verified unused by this set): `reggol`, `@cordisjs/utils`, `@cordisjs/element`, `@cordisjs/unyaml` (dev-time YAML import hook only).

## Local modifications

Keep this log exhaustive — every divergence from upstream must be listed.

1. **`hmr/src/index.ts`**: removed the `./locales/en-US.yml` / `./locales/zh-CN.yml` imports, the `.i18n({...})` call on the `Config` schema, and the `src/locales/` directory. Rationale: those imports require a runtime YAML loader hook (`@cordisjs/unyaml`) that we do not vendor; the i18n texts only localize config descriptions.
2. **All `package.json` files**: regenerated — added `private: true`, added precise `files` entries for bundled runtime files and `lib/types/**/*.d.ts` / `.d.ts.map`, preserved `src` in `files` only for packages whose previous file list already shipped it, added a `./src/*` export where missing, pointed declaration metadata at `lib/types`, and removed upstream `devDependencies`/`scripts`/`repository` fields. Dependency and peer-dependency ranges are preserved except that `hmr` declares `esbuild` as a direct dev dependency because its source imports the `BuildFailure` type and pnpm's strict workspace resolution requires the owner package to name that dependency, and `loader` requires `node-addon-require-builtin@^0.1.4` to match the runtime used by published app packages.
3. **All `tsconfig.json` files**: regenerated to extend the repo-root `tsconfig.base.json`, emit TypeScript intermediates to `lib/types`, and declare project references.
4. **Vendored TypeScript source internal specifiers**: changed local relative imports/exports from upstream's specifier shape to explicit `.ts` specifiers so TypeScript rewrites emitted JS to `.js` while declarations keep explicit, NodeNext-safe `.ts` specifiers. This includes `loader/src/config/isolate.ts` using `declare module './entry.ts'`.
5. **`schemastery/tsdown.config.ts` and `logger-console/tsdown.config.ts`**: ours, not upstream files — per-package build-shape overrides (dual ESM+CJS output; separate node/browser entries) for the repo-root tsdown build. They read the JS emitted under `lib/types` and then write the publish runtime entries under `lib/`. Like the regenerated tsconfigs, they are not part of the upstream sync surface.
6. **`cordis/src/fiber.ts` lifecycle hardening**: locally closes three reentrant disposal gaps. An effect's owner-list wrapper is registered before its setup body runs, so an unload begun from inside setup awaits setup and every collected cleanup; synchronous setup failure removes the wrapper and rolls back collected cleanup. Async cleanup stays owner-visible until quiescence, and Cordis's internal effect composition joins an already-running cleanup while repeated public disposer calls retain their upstream single-shot result. Effect creation is rejected while the owner is `UNLOADING` (while `PENDING` and `LOADING` remain legal), preventing cleanup-time registrations from escaping the unload snapshot. Child fibers register and receive their parent-owned disposer before `internal/plugin` publication, resolve dependency declarations added by that notification before activation, drain effects attached while pending, skip plugin execution when reentrant disposal invalidates the load epoch before its first checkpoint, and contain teardown-notification failures per observer so one callback cannot starve peers or interrupt ownership cleanup. `Fiber.update()` returns its `internal/update` waterfall result, allowing Loader callers to await a restart while preserving synchronous config validation.
7. **`cordis/src/*.ts` JSDoc enrichment**: added `@param`/`@returns` tags and contract documentation (disposal semantics, waterfall veto, bail conditions, error cases) across the public plugin-author surface — `Context` (class, statics, and the `Context` interface properties incl. `root`), `EventsService`, `Fiber`, `RegistryService`, `ReflectService`, `Service`, `LoggerService` and their `declare module './context.ts'` overloads. Comment-only; no code changes. Motivation: the website API-reference generator renders these docs and hard-errors on undocumented members. Retire this entry when the enrichment is upstreamed to the fork.
8. **Transactional Loader/Include config reconciliation**: Loader imports a changed entry name before disposal, awaits lifecycle settlement, and restores the previous plugin or config when candidate application fails. Loader settlement rechecks service-gated fibers after current tasks drain, rejects failures, and leaves fibers with absent dependencies pending. Group updates start candidates concurrently, await every outcome, contain sibling-start failures after their owning tree is disposed, undo changes and additions on live-update failure, await removal, preserve programmatic option identity, and persist direct or tree-level mutations only after success. Include reads and validates detached candidate content, applies patches to a clone, reconciles the tree, and only then commits its cached content/data; direct refresh failures propagate for the caller to contain. A non-array parse is invalid, patches re-apply on every file or Include-config update, an omitted patch list clears the overlay, and initial content falls back to `initial` only on `ENOENT`. Covered by `packages/boot/app-boot/tests/config-reload.spec.ts` and `packages/host/webserver/tests/webserver.spec.ts`.
9. **`hmr/src/index.ts` exact config watching**: `registerConfig()` watches one absolute config path outside module roots, including a path under missing parents, serializes and coalesces refreshes, and returns an async disposer that closes the watcher and drains active work. Module watches realpath their existing base directory, attach change listeners before declaring the service ready, and use that spelling for Node module-cache identity; exact config watches realpath the deepest existing watch ancestor and restore the missing suffix. Those native paths prevent Windows short-name aliases from colliding with long-form libuv event paths while exact-config callbacks keep the requested filename. Refresh failures are normalized to `Error`, logged, and broadcast through the parallel `hmr/config-update-failed` event; observer failures are contained. Config-file changes discovered by the ordinary HMR watcher use the same serialized path. Covered by `packages/boot/app-boot/tests/hmr-config.spec.ts`.
10. **Vendored Node-compatible TypeScript**: marked erased imports explicitly across `cordis`, `loader`, `include`, `hmr`, and `schemastery` so Node's native TypeScript transform does not request types as runtime exports. Schemastery's source uses an ESM default export and its package declares `type: module`; its built ESM/CJS entries retain explicit `.mjs`/`.cjs` extensions.
11. **`include/src/index.ts` patch-semantics export**: extracted the private `applyPatches` body into the exported pure function `applyEntryPatches(data, patches, warn)` (the method delegates to it) and exported the `!!js` YAML dialect as `entryListSchema`, so `dsh --dump-config` composes and prints exactly what the include would mount without booting a tree. Behavior-preserving for mounting; the extraction exists because config tooling must never reimplement (and drift from) the patch algorithm. `applyEntryPatches` also indexes each `insert`ed entry as it is added, so a later patch in the same list can configure or disable a row an earlier patch inserted; upstream built the id index once before the patch loop, leaving inserted rows silently unpatchable. That matters because `dsh` composes an empty profile root with each bundle's patch layer, the profile's and the home-level `cordis.patch.yml`, and any `--patch` overlays as sibling patch lists at one include level — patches never cross an include boundary, so surface-only rows would otherwise be unreachable from user config. Covered by `packages/boot/app-boot/tests/config-reload.spec.ts`.
12. **`include/src/index.ts` serialized child-tree mutation and `hmr/src/index.ts` main-watcher initial-scan suppression**: every Include child-tree mutation (initial apply, refresh, `internal/update` patch re-application) runs through one per-Include queue, because the group's transactional `update` is not reentrant — two concurrent applies interleave create and rollback on the same entries and strand the Include fiber without ever settling. The HMR main watcher passes `ignoreInitial: true`: the initial scan re-announced files boot had just consumed, and its `add` for a config file refreshed an Include mid-initial-apply; once serialized, a failing initial apply's rollback disposed HMR, whose teardown drain waited on the queued refresh sitting behind that same apply — a deadlock that exited 13 with no diagnostic. `registerConfig()` keeps its own `ignoreInitial: false` watcher because a user patch layer present at registration must apply once. Covered by the patch-overlay boot-failure built-bin case in `apps/cli/tests/built-bin.e2e.ts`.
13. **`include/src/index.ts` `writeTask` type**: widened the optional `writeTask?: NodeJS.Timeout` property to `NodeJS.Timeout | undefined` — the debounced writer assigns `undefined` on flush, which `exactOptionalPropertyTypes` rejects on a plain optional. Type-only; no behavior change.
14. **`include/src/index.ts` durable debounced writes**: serialized and tracked config-file writes, retried transient `EACCES`/`EBUSY`/`EPERM` rename failures with a bounded backoff, observed asynchronous timer rejections, and drained the latest write during Include teardown. Windows can briefly retain a destination handle after a Loader child disposes; the upstream fire-and-forget rename escaped as an unhandled rejection and could lose the persisted `disabled` state. A terminal failure is logged by the asynchronous writer and remains on the queue so `Include.stop()` rethrows it instead of silently declaring persistence complete; Cordis's ordinary fiber teardown retains its separate error-containment contract. Covered by `packages/host/directory-picker-auto/tests/loader-composition.spec.ts` with injected transient and terminal rename failures.
15. **Lazy Loader config resolution across `cordis/src/{events,fiber}.ts`, `loader/src/{index,config/entry}.ts`, `include/src/index.ts`, and `hmr/src/index.ts`**: ports [cordiverse/cordis#41](https://github.com/cordiverse/cordis/pull/41), retaining raw fiber config and resolving it through `internal/config` only after declared injections are active. Provider replacement re-resolves the raw expression, pending updates retain it, and HMR transfers it. Resolution applies only to the entry root, so child plugins mounted by a row keep caller-owned config identity. Include declares the `EntryGroup.key` tree-carrier marker (as Group does): its config is entry and patch lists, so interpolation keeps it literal and a `!!js` expression inside a nested row's config resolves lazily in that row's own fiber (Include's own `path` therefore stays literal too). Deferred failures retain the owning row diagnostic, and tree teardown does not persist failure-driven self-disposal. Covered by `packages/boot/app-boot/tests/{app-boot,user-patches}.spec.ts`, `packages/boot/cmdline/tests/cmdline.spec.ts`, `apps/cli/tests/web-agent-presets.e2e.ts`, and the built custom-profile cases in `apps/cli/tests/built-bin.e2e.ts`.
16. **`cordis/package.json` publishes `src`**: added `src` to the `files` list, joining the other eight vendored packages. Cordis declares `"./src/*": "./src/*"` in its exports, so a tarball without `src` publishes an export map pointing at absent files; the release change judgement also reads `files` to decide whether a diff reaches the payload, and a package whose only published paths are build output has no tracked path to match.
17. **`@deepseek-ai` rescope**: every vendored manifest `name`, every internal dependency entry among the vendored set, and every module specifier that reaches them use the scoped names in the manifest table's `npm name` column. Directory names, version numbers, and dependency ranges are unchanged, and no upstream runtime identifier is renamed — `Symbol.for('schemastery')` and Schemastery's `vendor:` metadata field keep their upstream values. Re-apply with `pnpm run rescope-vendor --apply` after a sync; the table's two name columns are the mapping, restated for consumers in [docs/rescope.md](../docs/rescope.md).
18. **Entry `disabled` interpolation in `loader/src/config/entry.ts`**: a `disabled: !!js` expression evaluates against the loader context at every mount decision; the raw node stays in the options, so write-back keeps the `!!js` form. `disabled` is the only interpolated metadata field. Covered by `packages/boot/app-boot/tests/user-patches.spec.ts` and `apps/cli/tests/windows-shell.spec.ts`.

## Sync procedure

To update a vendored package from upstream:

1. In the upstream workspace, note `git rev-parse HEAD` of the relevant submodule.
2. Copy the package's `src/` (and `bin.js`, `README.md`, `LICENSE` if changed) over the vendored directory.
3. Re-apply the local modifications listed above (or drop them if upstream made them unnecessary — update the log either way).
4. Update the version and commit hash in the manifest table.
5. Run `pnpm install && pnpm run test && pnpm run build` at the repo root.
